Publications
Publications
2023
Karama, M., Lawal, O., Parreira, V., Soni, M., Chen, Y., Cenci-Goga, B., Grispoldi, L., Greyling, J., & Goodridge, L. (2023). Draft genome sequences of two Salmonella Uzaramo isolates from poultry in South Africa. Microbiology Resource Announcements. Accepted
Moyne, A. L., Lawal, O. U., Goodridge, L., Levesque, R. C., & Harris, L. J. (2023). Genetic diversity of Salmonella enterica isolated from raw California almonds and from an almond orchard over 13 years. PLOS One, 18(9), e0291109.
https://doi.org/10.1371/journal.pone.0291109
Gao, R., Duceppe, M.-O., Chattaway, M. A., Goodridge, L., & Ogunremi, D. (2023). Application of prophage sequence analysis to investigate a disease outbreak involving Salmonella Adjame: A rare serovar and implications for the population structure. Frontiers in Microbiology, 14, 1086198.
https://doi.org/10.3389/fmicb.2023.1086198
2022
Cavestri, C., Savard, P., Fliss, I., Emond-Rhéault, J. G., Hamel, J., Kukavica-Ibrulj, I., Boyle, B., Daigle, F., Malo, D., Bekal, S., Harris, L. J., Levesque, R. C., Goodridge, L., & LaPointe, G. (2022). Salmonella enterica subsp. enterica virulence potential can be linked to higher survival within a dynamic in vitro human gastrointestinal model. Food Microbiology, 101, 103877.
https://doi.org/10.1016/j.fm.2021.103877
Gao, R., Huang, H., Hamel, J., Levesque, R. C., Goodridge, L., & Ogunremi, D. (2022). Application of a high-throughput targeted sequence AmpliSeq procedure to assess the presence and variants of virulence genes in Salmonella. Microorganisms, 10, 369.
https://doi.org/10.3390/microorganisms10020369
Marik, C., Strawn, L. K., Chapin, T., McEgan, R., Reddy, S., Friedrich, L., Goodridge, L., Weller, D. L., Schneider, K. R., Danyluk, M. (2022). Factors associated with E. coli levels in and Salmonella contamination of agricultural water differed between North and South Florida waterways. Frontiers in Water.
https://doi.org/10.3389/frwa.2021.750673
2020
Herod, A., Emond-Rheault, J-G., Tamber, S., Goodridge, L., Lévesque, R. C., Rohde, J. (2022). Genomic and phenotypic analysis of SspH1 identifies a new Salmonella effector, SspH3. Molecular Microbiology, 117(4), 770-789.
https://doi.org/10.1111/mmi.14871
Emond-Rheault, J-G., Hamel, J., Jeukens, J., Freschi, L., Kukavica-Ibrulj, I., Boyle, B., Tamber, S., Malo, D., Franz, E., Burnett, E., Daigle, F., Arya, G., Sanderson, K., Wiedmann, M., Slawson, R. M., Weadge, J. T., Stephan, R., Bekal, S., Gruenheid, S., Goodridge, L. D., & Levesque, R. C. (2020). The Salmonella enterica Plasmidome as a reservoir of antibiotic resistance. Microorganisms, 8(7), 1016.
https://doi.org/10.3390/microorganisms8071016
Crouse, A., Schramm, C., Emond-Rheault, J-G., Herod, A., Kerhoas, M., Rohde, J., Gruenheid, S., Kukavica-Ibrulj, I., Boyle, B., Greenwood, C. M. T., Goodridge, L. D., Garduno, R., Levesque, R. C., Malo, D., & Daigle, F. (2020). Combining whole-genome sequencing and multimodel phenotyping to identify genetic predictors of Salmonella virulence. Msphere, 5(3).
Wong, C. W. Y., Delaquis, P., Goodridge, L., Lévesque, R. C., Fong, K., Wang, S. (2020). Inactivation of Salmonella enterica on post-harvest cantaloupe and lettuce by a lytic bacteriophage cocktail. Current Research in Food Science, 2, 25-32.
Said, L. B., Emond‐Rheault, J-G., Soltani, S., Telhig, S., Zirah, S., Rebuffat. S., Diarra, M. S., Goodridge, L., Levesque, R. C., & Fliss, I. (2020). Phenomic and genomic approaches to studying the inhibition of multiresistant Salmonella enterica by microcin J25. Environmental Microbiology, 7, 2907-2920.
https://doi.org/10.1111/1462-2920.15045
Yousfi, K., Usongo, V., Berry, C., Khan, R. H., Tremblay, D. M., Moineau, S., Mulvey, M. R., Doualla-Bell, F., Fournier, E., Nadon, C., Goodridge, L., & Bekal, S. (2020). Source tracking based on core genome SNV and CRISPR typing of Salmonella enterica serovar Heidelberg isolates involved in foodborne outbreaks in Québec, 2012. Frontiers in Microbiology, 11, 1317. https://doi.org/10.3389/fmicb.2020.01317
Pilar, A. V. C., Petronella, N., Dussault, F. M., Verster, A. J., Bekal, S., Levesque, R. C., Goodridge, L., & Tamber, S. (2020). Similar yet different: Phylogenomic analysis to delineate Salmonella and Citrobacter species boundaries. BMC Genomics, 21, 377.
https://doi.org/10.1186/s12864-020-06780-y
Gao, R., Naushad, S., Moineau, S., Levesque, R., Goodridge, L., & Ogunremi, D. (2020). Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica. BMC Genomics, 21, 374.
https://doi.org/10.1186/s12864-020-6765-z
Ogunremi, D., Dupras, A. A., Naushad, S., Gao, R., Duceppe, M-O., Omidi, K., Márquez, I. G., Huang, H., Goodridge, L., Lévesque, R. C., Hasan, N. A., Dadlani, M., Dixon, B., Magierowski, S., & Masson, L. (2020). A new whole genome culture-independent diagnostic test (WG-CIDT) for rapid detection of Salmonella in lettuce. Frontiers in Microbiology, 11, 602.
Fong, K., Mu, K., Rheault, J-G., Levesque, R. C., Kitts, D. D., Delaquis, P., Goodridge, L., & Wang, S. (2020). Bacteriophage-insensitive mutants of antimicrobial-resistant Salmonella enterica are altered in their tetracycline resistance and virulence in Caco-2 intestinal cells. International Journal of Molecular Sciences, 21(5), 1883.
https://doi.org/10.3390/ijms21051883
Barrere, V., Tompkins, E., Armstrong, M., Bird, P., Bastin, B., & Goodridge, L. (2020). Optimization of Salmonella detection in garlic, onion, cinnamon, red chili pepper powders, and green tea. International Journal of Food Microbiology, 316, 108440.
2019
Herod, A., Goodridge, L., & Rohde, J. (2019). Recalls of foods due to microbial contamination classified by the Canadian Food Inspection Agency, 2000 to 2017. Journal of Food Protection, 82(11), 1901–1908.
https://doi.org/10.4315/0362-028X.JFP-19-235.
Fong, K., Tremblay, D. M., Delaquis, P., Goodridge, L., Levesque, R. C., Moineau, S., Suttle, C. A., & Wang, S. (2019). Diversity and host specificity revealed by biological characterization and whole genome sequencing of bacteriophages infecting Salmonella enterica. Viruses, 11(9), 854.
https://doi.org/10.3390/v11090854
Wong, C. W. Y., Wang, S., Levesque, R., Goodridge, L., & Delaquis, P. (2019). Fate of 43 Salmonella strains on lettuce and tomato seedlings. Journal of Food Protection, 82(6), 1045–1051.
Ngueng Feze, I., Dalpé, G., Song, L., Farber, J., Goodridge, L., Levesque, R. C., & Joly, Y. (2018). For the safety of fresh produce: Regulatory considerations for Canada on the use of whole genome sequencing to subtype Salmonella. Frontiers in Sustainable Food Systems.
https://doi.org/10.3389/fsufs.2018.00021
2018
Xie, B., Dupras, A. A., Duceppe, M.-O., Fattahi-Ghazi, N., Goodridge, L., Ogunremi, D. (2018). Genome sequences of 13 isolates of Salmonella enterica Serovar Typhimurium var. Copenhagen obtained from wild pigeons in Canada. Genome Announcements, 6(20), e00392-18.
https://doi.org/10.1128/genomeA.00392-18
Goodridge, L. D., Fong, K., Wang, S., & Delaquis, P. (2018). Bacteriophage-based weapons for the war against foodborne pathogens. Current Opinion in Food Science, 20. 10.1016/j.cofs.2018.03.017.
Cadieux, B., Colavecchio, A., Jeukens, J., Freschi, L., Emond-Rheault, J-G., Kukavica-Ibrulj, I., Levesque, R.C., Bekal, S., Chandler, J. C., Coleman, S.M., Bisha, B., & Goodridge, L.D. (2018). Prophage induction reduces Shiga toxin producing Escherichia coli (STEC) and Salmonella enterica on tomatoes and spinach: a model study. Food Control, 89, 250-259.
https://doi.org/10.1016/j.foodcont.2018.02.001.
Mottawea, W., Duceppe, M.O., Dupras, A.A., Usongo, V., Jeukens, J., Freschi, L., Emond-Rheault, J-G., Hamel, J., Kukavica-Ibrulj, I., Boyle, B., Gill, A., Burnett, E., Franz, E., Arya, G., Weadge, J.T., Gruenheid, S., Wiedmann, M., Huang, H., Daigle, F., Moineau, S., Bekal, S., Levesque, R.C., Goodridge, L., & Ogunremi, D. (2018). Salmonella enterica prophage sequence profiles reflect genome diversity and can be used for high discrimination subtyping. Frontiers in Microbiology.
https://doi.org/10.3389/fmicb.2018.00836
Usongo, V., Berry, C., Yousfi, K., Doualla-Bell, F., Labbe, G., Johnson, R., Fournier, E., Nadon, C., Goodridge, L., & Bekal, S. (2018). Impact of the choice of the reference genome on the ability of the core genome SNV methodology to distinguish strains of Salmonella enterica serovar Heidelberg. PLOS One.
https://doi.org/10.1371/journal.pone.0192233.
Vincent, C., Usongo, V., Berry, C., Tremblay, D., Moineau, S., Yousfi, K., Doualla-Bell, F., Fournier, E., Nadon, C., Goodridge, L. D., & Bekal, S. (2018). Comparison of advanced whole genome sequence-based methods to distinguish strains of Salmonella enterica serovar Heidelberg involved in foodborne outbreaks in Québec. Food Microbiology.
https://doi.org/10.1016/j.fm.2018.01.004
2017
Fong, K., LaBossiere, B., Switt, A. I. M., Delaquis, P., Goodridge, L., Levesque, R. C., Danyluk, M. D., & Wang, S. (2017). Characterization of four novel bacteriophages isolated from British Columbia for control of non-typhoidal Salmonella in vitro and on sprouting alfalfa seeds. Frontiers in Microbiology, 8, 2193.
https://doi.org/10.3389/fmicb.2017.02193
Colavecchio, A., D’Souza, Y., Tompkins, E., Jeukens, J., Freschi, L., Emond-Rheault, J-G., Kukavica-Ibrulj, I., Boyle, B., Bekal, S., Tamber, S., Levesque, R. C., & Goodridge, L.D. (2017). Prophage integrase typing is a useful indicator of genomic diversity in Salmonella enterica. Frontiers in Microbiology.
https://doi.org/10.3389/fmicb.2017.01283
Colavecchio, A., Cadieux, B., Lo, A., & Goodridge, L. D. (2017). Bacteriophages contribute to the spread of antibiotic resistance genes among foodborne pathogens of the Enterobacteriaceae family– A review. Frontiers in Microbiology, 8, 1108.
https://doi.org/10.3389/fmicb.2017.01108
Emond-Rheault, J-G., Colavecchio, A., Cadieux, B., Barrere, V., Usongo, V., Mottawea, W., Pilar, A.V.C., Goodridge, L., et al. (2017). A syst-OMICS approach to ensuring food safety and reducing the economic burden of salmonellosis. Frontiers in Microbiology.
https://doi.org/10.3389/fmicb.2017.00996
Coleman, S., Bisha, B., Bunning, M., Newman, S., & Goodridge, L. D. (2017). Transmission and persistence of Salmonella enterica in nutrient solution of hydroponic greenhouse grown tomatoes. Horticultural Science, 52, 713-718.
2014
Bisha, B., Adkins, J. A., Jokerst, J. C., Chandler, J. C., Perez-Mendez, A., Coleman, S. M., Sbodio, A. O., Suslow, T. V., Danyluk, M. D., Henry, C. S., & Goodridge, L. D. (2014). Colorimetric paper-based detection of Escherichia coli, Salmonella spp., and Listeria monocytogenes from large volumes of agricultural water. Journal of Visualized Experiments, 9(88).
https://doi.org/10.3791/51414
McEgan, R., Chandler, J. C., Goodridge, L. D., & Danyluk, M. D. (2014). Diversity of Salmonella isolates from central Florida surface waters. Applied and Environmental Microbiology, 80, 6819-6827.
2013
McEgan, R., Rodrigues, C. A., Sbodio, A., Suslow, T. V., Goodridge, L. D., & Danyluk, M. D. (2013). Detection of Salmonella spp. from large volumes of water by modified Moore swabs and tangential flow filtration. Letters in Applied Microbiology, 56, 88-94.
McEgan, R., Mootian, G., Goodridge, L. D., Schaffner, D. W., & Danyluk, M. D. (2013). Predicting Salmonella populations from biological, chemical, and physical indicators in Florida surface waters. Applied and Environmental Microbiology, 79, 4094-4105.
2011
Bisha, B., Perez-Mendez, A., Danyluk, M. D., & Goodridge, L. D. (2011). Evaluation of modified Moore swabs and continuous flow centrifugation for concentration of Salmonella and Escherichia coli O157:H7 from large volumes of water. Journal of Food Protection, 74, 1934-1937.
Pittman, C. I., Pendleton, S., Bisha, B., O’Bryan, C. A., Belk, K. E., Goodridge, L., Crandall, P. G., & Ricke, S. C. (2011). Activity of citrus essential oils against Escherichia coli O157:H7 and Salmonella spp. and effects on beef subprimal cuts under refrigeration. Journal of Food Science, 76(6), M433-M438.
Book Chapters
Tracking Salmonella Enteritidis in the Genomics Era: Clade Definition Using a SNP-PCR Assay and Implications for Population Structure. D. Ogunremi, R. Gao, R. Slowey, S. Chen, O. Andrievskaia, S. Bekal, L. Goodridge and R. C. Levesque. In A. Lamas, P. Regal, and C. Franco (Eds.), Salmonella spp: A Global Challenge. 2021.
https://doi.org/10.5772/intechopen.98309
Alternative Methods for Rapid Whole-Cell Detection of Salmonella spp. B. Bisha, and Goodridge, L. D. In A. S. Monte and P. E. De Santos (Ed), Salmonella: Classification, Genetics and Disease Outbreaks. 2012. Nova Science Publishers, Hauppauge, NY. pp. 135-154.